refactor(modules): organize module tree

modules/shell/direnv.nix

@@ -0,0 +1,25 @@
+{
+  config,
+  lib,
+  ...
+}:
+# direnv for the primary user, configured through home-manager.
+let
+  cfg = config.modules.shell.direnv;
+  user = config.user.name;
+in
+{
+  options.modules.shell.direnv.enable =
+    lib.mkEnableOption "direnv for the primary user, with nix-direnv shell caching";
+
+  config = lib.mkIf cfg.enable {
+    home-manager.users.${user}.programs.direnv = {
+      enable = true;
+      silent = true;
+
+      # nix-direnv caches the evaluated shell so re-entering a directory is instant
+      # instead of re-running `nix develop`, and adds the `use flake` stdlib helper.
+      nix-direnv.enable = true;
+    };
+  };
+}