~/.claude/skills is generated by home-manager: the directories are real
but every leaf file is a read-only symlink into the store. The skills
that author and install skills assumed it was an ordinary writable tree.
- craft-skill: personal skills are authored in modules/claude-code/skills
and applied by a rebuild, never edited under ~/.claude/skills; writing
there succeeds silently and strands the skill outside the repo.
- setup-skills, update-skills: copy out of the library with cp -rL and
chmod -R u+w. A plain cp -r copies the symlinks, committing store paths
into the project, and dereferenced files keep the store's read-only mode.
- craft-skill also staged through `dot add`, a fish function this repo no
longer carries; plain git add replaces it.
Bring the declarative half of ~/.claude into modules/claude-code and apply
it when the Module is enabled: the global agent instructions (context =
./CLAUDE.md), the skills tree (skills = ./skills), the attention-bell hook,
and settings.json (model = opus plus the Stop/Notification/SessionStart
hook wiring).
Runtime state (projects, plugins, cache, history, sessions) and the
.credentials.json secret are left out, so login survives rebuilds and no
secret enters the repo. Verified against the built home-files that
~/.claude/{CLAUDE.md,settings.json,skills,hooks/attention-bell.sh} are
generated, the hook executable.
